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MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows
npx @getmcp/cli add io.github.galaxyproject/galaxy-mcpRequires Python 3.10+. Community-contributed server. Review source before installing.
GALAXY_URLURL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)
GALAXY_API_KEYAPI key for authenticating with the Galaxy instance
Config file: ~/Library/Application Support/Claude/claude_desktop_config.json
{
"mcpServers": {
"io.github.galaxyproject/galaxy-mcp": {
"command": "uvx",
"args": [
"galaxy-mcp"
],
"env": {
"GALAXY_URL": "",
"GALAXY_API_KEY": ""
}
}
}
}